SysQuan Mouse Database

Fast, large-scale absolute quantification for human samples. Unlike traditional methods requiring expensive synthetic peptides for each target, SysQuan uses metabolically K6-labeled mouse tissues with pre-quantified proteins. Simply mix your human samples with our standardized mouse tissue extracts to achieve absolute quantification across the entire proteome.

How to Use:

Search for proteins by gene name, UniProt accession, or peptide sequence
Filter by tissue type or assay availability (MRM, PRM-PASEF)
Select peptides to add them to your cart
Access MRM/PRM transitions, calibration curves, and observed peptide spectra
Download assay data

Available Data:

Optimized MRM & PRM-PASEF transitions for targeted MS
Absolute quantification calibration curves (fmol/μg)
Observed peptide MS/MS spectra from mouse tissues
Multi-tissue coverage across mouse organs

Use the SysQuan Kit: Pre-quantified K6-labeled mouse tissue extracts ready to spike into your human samples for rapid absolute quantification—no need for expensive synthetic peptide standards!

Uniprot ID	Gene	Peptide Sequence	Tissue	Mouse Conc. (fmol/μg)	Incorp. (%)	Assays Available	PTM
Q9D6F9	Tubb4a	EIVHLQAGQCGNQIGAK	Cerebrum	—	100.0	MRM	['Cys']
Q9D6J6	Ndufv2	QNGWLPISAMNK	BrainStem	—	100.0	MRM	['Meth']
Q9D6J6	Ndufv2	QNGWLPISAMNK	MockWholeBrain	—	100.0	MRM	['Meth']
Q9D7B6	Acad8	FCPPLCTMEK	BrainStem	—	100.0	MRM	['Meth', 'Cys']
Q9D7B6	Acad8	FCPPLCTMEK	Cerebellum	—	100.0	MRM	['Meth', 'Cys']
Q9D7B6	Acad8	FCPPLCTMEK	Cerebrum	—	100.0	MRM	['Meth', 'Cys']
Q9D7B6	Acad8	FCPPLCTMEK	MockWholeBrain	—	100.0	MRM	['Meth', 'Cys']
Q9D7G0	Prps1	NCTIVSPDAGGAK	Cerebellum	—	100.0	MRM	['Cys']
Q9D819	Ppa1	HTGCCGDNDPIDVCEIGSK	BrainStem	—	100.0	MRM	['Cys']
Q9D819	Ppa1	HTGCCGDNDPIDVCEIGSK	Cerebellum	—	100.0	MRM	['Cys']
Q9D819	Ppa1	HTGCCGDNDPIDVCEIGSK	Cerebrum	—	100.0	MRM	['Cys']
Q9D819	Ppa1	HTGCCGDNDPIDVCEIGSK	MockWholeBrain	—	100.0	MRM	['Cys']
Q9DAU1	Cnpy3	LIEVTETICK	Cerebellum	—	100.0	MRM	['Cys']
Q9DBJ1	Pgam1	SYDVPPPPMEPDHPFYSNISK	BrainStem	—	100.0	MRM	['Meth']
Q9DBJ1	Pgam1	SYDVPPPPMEPDHPFYSNISK	Cerebrum	—	100.0	MRM	['Meth']
Q9DBJ1	Pgam1	YADLTEDQLPSCESLK	BrainStem	—	100.0	MRM	['Cys']
Q9DBJ1	Pgam1	YADLTEDQLPSCESLK	Cerebrum	—	100.0	MRM	['Cys']
Q9DCD0	Pgd	VGTGEPCCDWVGDEGAGHFVK	BrainStem	—	100.0	MRM	['Cys']
Q9DCD0	Pgd	VGTGEPCCDWVGDEGAGHFVK	Cerebellum	—	100.0	MRM	['Cys']
Q9DCD0	Pgd	VGTGEPCCDWVGDEGAGHFVK	Cerebrum	—	100.0	MRM	['Cys']
Q9DCJ9	Npl	TNQMLEAFEQK	BrainStem	—	100.0	MRM	['Meth']
Q9DCL9	Paics	ITSCIFQLLQEAGIK	BrainStem	—	100.0	MRM	['Cys']
Q9DCL9	Paics	ITSCIFQLLQEAGIK	Cerebellum	—	100.0	MRM	['Cys']
Q9DCL9	Paics	ITSCIFQLLQEAGIK	MockWholeBrain	—	100.0	MRM	['Cys']
Q9DCL9	Paics	VVVLMGSTSDLGHCEK	BrainStem	—	100.0	MRM	['Meth', 'Cys']
Q9DCL9	Paics	VVVLMGSTSDLGHCEK	Cerebellum	—	100.0	MRM	['Meth', 'Cys']
Q9DCL9	Paics	VVVLMGSTSDLGHCEK	Cerebrum	—	100.0	MRM	['Meth', 'Cys']
Q9DCL9	Paics	VVVLMGSTSDLGHCEK	MockWholeBrain	—	100.0	MRM	['Meth', 'Cys']
Q9DCZ1	Gmpr	STCTYVGAAK	BrainStem	—	100.0	MRM	['Cys']
Q9DCZ1	Gmpr	STCTYVGAAK	MockWholeBrain	—	100.0	MRM	['Cys']
Q9ERD7	Tubb3	EIVHLQAGQCGNQIGAK	BrainStem	—	100.0	MRM	['Cys']
Q9ERD7	Tubb3	EIVHLQAGQCGNQIGAK	Cerebrum	—	100.0	MRM	['Cys']
Q9ERD7	Tubb3	EIVHLQAGQCGNQIGAK	MockWholeBrain	—	100.0	MRM	['Cys']
Q9ET01	Pygl	INPSSMFDVHVK	BrainStem	—	100.0	MRM	['Meth']
Q9ET01	Pygl	INPSSMFDVHVK	Cerebrum	—	100.0	MRM	['Meth']
Q9JII6	Akr1a1	MPLIGLGTWK	BrainStem	—	100.0	MRM	['Meth']
Q9JII6	Akr1a1	MPLIGLGTWK	Cerebellum	—	100.0	MRM	['Meth']
Q9JII6	Akr1a1	MPLIGLGTWK	Cerebrum	—	100.0	MRM	['Meth']
Q9JII6	Akr1a1	MPLIGLGTWK	MockWholeBrain	—	100.0	MRM	['Meth']
Q9JJZ2	Tuba8	TIQFVDWCPTGFK	Cerebellum	—	100.0	MRM	['Cys']
Q9JK38	Gnpnat1	ITLECLPQNVGFYK	BrainStem	—	100.0	MRM	['Cys']
Q9JK38	Gnpnat1	ITLECLPQNVGFYK	Cerebellum	—	100.0	MRM	['Cys']
Q9JK38	Gnpnat1	ITLECLPQNVGFYK	Cerebrum	—	100.0	MRM	['Cys']
Q9JLI6	Scly	NFRPGTENTPMIAGLGK	Cerebellum	—	100.0	MRM	['Meth']
Q9QUI0	Rhoa	HFCPNVPIILVGNK	BrainStem	—	100.0	MRM	['Cys']
Q9QUI0	Rhoa	HFCPNVPIILVGNK	Cerebellum	—	100.0	MRM	['Cys']
Q9QUI0	Rhoa	HFCPNVPIILVGNK	Cerebrum	—	100.0	MRM	['Cys']
Q9QUI0	Rhoa	HFCPNVPIILVGNK	MockWholeBrain	—	100.0	MRM	['Cys']
Q9QUI0	Rhoa	LVIVGDGACGK	BrainStem	—	100.0	MRM	['Cys']
Q9QUI0	Rhoa	LVIVGDGACGK	Cerebrum	—	100.0	MRM	['Cys']

SysQuan Mouse Database

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