Welcome to SysQuan Mouse
You're looking at the coverage statistics for the SysQuan mouse atlas: how many proteins we can quantify, which tissues they were measured in, and the targeted assays (MRM, PRM) available for each. Mix your mouse samples with our pre-quantified K6-labelled mouse reference proteome to get absolute quantification for your proteins of interest. Explore our database →
Quantifiable Proteins
16770
Targeted Assays
3299
Tissues Covered
19
Protein Coverage by Tissue
| Tissue | Total | Quantifiable |
|---|---|---|
| BoneMarrow single injection | 5478 | 4058 |
| Brain stem | 12163 | 10062 |
| Cerebellum | 11772 | 9629 |
| Cerebrum | 12427 | 10280 |
| Heart | 8666 | 6866 |
| Kidney | 10282 | 8507 |
| Liver | 10582 | 8758 |
| Lung | 12241 | 10315 |
| LymphNodes single injection | 5326 | 3832 |
| Muscle single injection | 3030 | 2218 |
| Pancreas single injection | 3304 | 2637 |
| Plasma | 1951 | 1247 |
| SalivaryGland single injection | 5093 | 3716 |
| SmallIntestines single injection | 5508 | 4150 |
| Spermatozoa single injection | 2885 | 2142 |
| Spleen single injection | 5156 | 3726 |
| Tail skin single injection | 2154 | 1507 |
| Thymus single injection | 4636 | 3190 |
| Thyroid single injection | 3449 | 2462 |
| Total Unique | 20077 | 16770 |
Tissues marked single injection were acquired without offline fractionation. All others were fractionated, which is why their protein counts are higher.
Phosphopeptides by Tissue
| Tissue | Total | Quantifiable |
|---|---|---|
| Brain stem | 4638 | 1872 |
| Cerebellum | 4795 | 1854 |
| Cerebrum | 5801 | 2338 |
| Liver | 2808 | 1159 |
| Total Unique | 10486 | 4133 |
Targeted Assays Available
| Tissue | MRM | PRM-PASEF | Total |
|---|---|---|---|
| BoneMarrow | 1578 | 960 | 1586 |
| Brain stem | 2753 | 1473 | 2766 |
| Cerebellum | 2678 | 1420 | 2687 |
| Cerebrum | 2714 | 1437 | 2728 |
| Heart | 2519 | 1367 | 2531 |
| Kidney | 2867 | 1520 | 2881 |
| Liver | 2952 | 1571 | 2965 |
| Lung | 2916 | 1572 | 2928 |
| LymphNodes | 1671 | 1009 | 1676 |
| Muscle | 1154 | 727 | 1158 |
| Pancreas | 1342 | 810 | 1347 |
| Plasma | 752 | 512 | 762 |
| SalivaryGland | 1694 | 1011 | 1701 |
| SmallIntestines | 1756 | 1039 | 1764 |
| Spermatozoa | 757 | 466 | 762 |
| Spleen | 1537 | 940 | 1543 |
| Tail skin | 876 | 598 | 881 |
| Thymus | 1503 | 907 | 1508 |
| Thyroid | 1324 | 841 | 1331 |
Tissue-Specific Peptide Entries
Proteins Shared Across Tissues
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