| Uniprot ID | Gene | Peptide Sequence | Tissue | Mouse Conc. (fmol/μg) | Incorp. (%) | Missed Cleav. | Assays Available | PTM | |
|---|---|---|---|---|---|---|---|---|---|
| Q7TNC9 | Inpp5a | AADTNEVVK | Cerebrum | — | — | 0 | MRM | — | |
| Q80TF3 | Pcdh19 | TFATFGK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q80TH2 | Erbin | NGIQEFPENIK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q8BHF7 | Pgs1 | AEYQILLASPEVNGFFGAK | Cerebellum | — | — | 0 | MRM | — | |
| Q8BHF7 | Pgs1 | AEYQILLASPEVNGFFGAK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q8BML9 | Qars1 | FHKPGENYK | Cerebellum | — | — | 0 | MRM | — | |
| Q8BVE3 | Atp6v1h | YNALLAVQK | Cerebellum | — | — | 0 | MRM | — | |
| Q8CG03 | Pde5a | EEVVGVAQAINK | BrainStem | — | — | 0 | MRM | — | |
| Q8CG03 | Pde5a | EEVVGVAQAINK | Cerebellum | — | — | 0 | MRM | — | |
| Q8CG03 | Pde5a | EEVVGVAQAINK | Cerebrum | — | — | 0 | MRM | — | |
| Q8CG03 | Pde5a | EEVVGVAQAINK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q8CG03 | Pde5a | ISASEFDRPLRPIVVK | Cerebrum | — | — | 0 | MRM | — | |
| Q8CG03 | Pde5a | ISASEFDRPLRPIVVK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q8CGA4 | Mturn | TLHEVLEK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q8CHR6 | Dpyd | DFLPLVAK | BrainStem | — | — | 0 | MRM | — | |
| Q8CHR6 | Dpyd | DFLPLVAK | Cerebrum | — | — | 0 | MRM | — | |
| Q8CIE6 | Copa | DADSQNPDAPEGK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q8K0C4 | Cyp51a1 | TFTYLLGSDAAALLFNSK | BrainStem | — | — | 0 | MRM | — | |
| Q8K157 | Galm | ASDVVLGFAELEGYLQK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q8QZS1 | Hibch | QIYPQLK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q8R2W9 | Pank3 | LSYFEPIDITAEEEQEEVESLK | Cerebrum | — | — | 0 | MRM | — | |
| Q8R2W9 | Pank3 | LSYFEPIDITAEEEQEEVESLK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q8R429 | Atp2a1 | VGEATETALTTLVEK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q8VCH6 | Dhcr24 | HVENYLK | BrainStem | — | — | 0 | MRM | — | |
| Q8VCH6 | Dhcr24 | HVENYLK | Cerebrum | — | — | 0 | MRM | — | |
| Q8VDD5 | Myh9 | FLSNGHVTIPGQQDK | BrainStem | — | — | 0 | MRM | — | |
| Q8VDD5 | Myh9 | FLSNGHVTIPGQQDK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q8VEK3 | Hnrnpu | NGQDLGVAFK | Cerebellum | — | — | 0 | MRM | — | |
| Q91VW5 | Golga4 | EQQESLALEELELQK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q91YN5 | Uap1 | FVFDIFQFAK | Cerebrum | — | — | 0 | MRM | — | |
| Q91YP3 | Dera | GTELDLSWISK | BrainStem | — | — | 0 | MRM | — | |
| Q91YQ5 | Rpn1 | THYIVGYNLPSYEYLYNLGDQYALK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q91ZJ5 | Ugp2 | LVEIAQVPK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q922U2 | Krt5 | TEAESWYQTK | Cerebellum | — | — | 0 | MRM | — | |
| Q923E4 | Sirt1 | DINTIEDAVK | BrainStem | — | — | 0 | MRM | — | |
| Q923E4 | Sirt1 | DINTIEDAVK | Cerebrum | — | — | 0 | MRM | — | |
| Q924Z4 | Cers2 | NQDRPSLLK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q99J08 | Sec14l2 | LFPVAYNLIKPFLSEDTR | MockWholeBrain | — | — | 0 | MRM | — | |
| Q99J27 | Slc33a1 | EETQGITDTYK | Cerebrum | — | — | 0 | MRM | — | |
| Q99KK7 | Dpp3 | FVPNLPK | Cerebellum | — | — | 0 | MRM | — | |
| Q99KQ4 | Nampt | TPAGNFVTLEEGK | Cerebrum | — | — | 0 | MRM | — | |
| Q99LB7 | Sardh | AIDSLSIEK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q99LB7 | Sardh | LQGDALSVGGYEANPIFWEEVSDK | Cerebellum | — | — | 0 | MRM | — | |
| Q99LB7 | Sardh | LQGDALSVGGYEANPIFWEEVSDK | Cerebrum | — | — | 0 | MRM | — | |
| Q99LX0 | Park7 | VTVAGLAGK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q99PT1 | Arhgdia | SIQEIQELDK | BrainStem | — | — | 0 | MRM | — | |
| Q99PT1 | Arhgdia | SIQEIQELDK | Cerebrum | — | — | 0 | MRM | — | |
| Q9CPY4 | Cdk2ap2 | EIRPTYAGSK | Cerebrum | — | — | 0 | MRM | — | |
| Q9CPY4 | Cdk2ap2 | EIRPTYAGSK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q9CPY7 | Lap3 | FAEIIEK | MockWholeBrain | — | — | 0 | MRM | — |