| Uniprot ID | Gene | Peptide Sequence | Tissue | Mouse Conc. (fmol/μg) | Incorp. (%) | Missed Cleav. | Assays Available | PTM | |
|---|---|---|---|---|---|---|---|---|---|
| P39098 | Man1a2 | FDLGLEDVLIPHVDAGK | MockWholeBrain | — | — | 0 | MRM | — | |
| P40338 | Vhl | SLVKPENYR | BrainStem | — | — | 0 | MRM | — | |
| P47713 | Pla2g4a | NVSHNPLLLLTPQK | Cerebellum | — | — | 0 | MRM | — | |
| P47713 | Pla2g4a | NVSHNPLLLLTPQK | MockWholeBrain | — | — | 0 | MRM | — | |
| P47931 | Fst | LSTSWTEEDVNDNTLFK | Cerebellum | — | — | 0 | MRM | — | |
| P49722 | Psma2 | AANGVVLATEK | MockWholeBrain | — | — | 0 | MRM | — | |
| P49817 | Cav1 | HLNDDVVK | Cerebellum | — | — | 0 | MRM | — | |
| P50096 | Impdh1 | IAQGVSGSIQDK | BrainStem | — | — | 0 | MRM | — | |
| P50096 | Impdh1 | IAQGVSGSIQDK | MockWholeBrain | — | — | 0 | MRM | — | |
| P50285 | Fmo1 | VAIVGAGVSGLASIK | Cerebellum | — | — | 0 | MRM | — | |
| P55288 | Cdh11 | VTITLTDVNDNPPK | MockWholeBrain | — | — | 0 | MRM | — | |
| P58058 | Nadk | DASLLQPFK | BrainStem | — | — | 0 | MRM | — | |
| P58058 | Nadk | DASLLQPFK | Cerebellum | — | — | 0 | MRM | — | |
| P58058 | Nadk | DASLLQPFK | Cerebrum | — | — | 0 | MRM | — | |
| P58802 | Tbc1d10a | YLPGYYSEK | MockWholeBrain | — | — | 0 | MRM | — | |
| P63158 | Hmgb1 | GEHPGLSIGDVAK | Cerebrum | — | — | 0 | MRM | — | |
| P70290 | Mpp1 | FETVHQIHK | MockWholeBrain | — | — | 0 | MRM | — | |
| P70460 | Vasp | QVWGLNFGSK | MockWholeBrain | — | — | 0 | MRM | — | |
| P97366 | Evi5 | TYPEHNFFK | BrainStem | — | — | 0 | MRM | — | |
| P97366 | Evi5 | TYPEHNFFK | MockWholeBrain | — | — | 0 | MRM | — | |
| P97372 | Psme2 | AFYAELYHIISSNLEK | Cerebellum | — | — | 0 | MRM | — | |
| P97372 | Psme2 | VEAFQTTISK | BrainStem | — | — | 0 | MRM | — | |
| P97372 | Psme2 | VEAFQTTISK | Cerebrum | — | — | 0 | MRM | — | |
| P97372 | Psme2 | VEAFQTTISK | MockWholeBrain | — | — | 0 | MRM | — | |
| P97429 | Anxa4 | WGTDEVK | BrainStem | — | — | 0 | MRM | — | |
| P97742 | Cpt1a | QSLDAVEK | Cerebellum | — | — | 0 | MRM | — | |
| Q01237 | Hmgcr | FLSDAEIIQLVNAK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q01279 | Egfr | NYDLSFLK | Cerebellum | — | — | 0 | MRM | — | |
| Q01279 | Egfr | NYDLSFLK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q01768 | Nme2 | NIIHGSDSVESAEK | BrainStem | — | — | 0 | MRM | — | |
| Q3UH17 | Fn1 | TYHVGEQWQK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q3V0K9 | Pls1 | EELEELQEAFNK | Cerebrum | — | — | 0 | MRM | — | |
| Q3V0K9 | Pls1 | EELEELQEAFNK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q5DQR4 | Stxbp5l | NSEPFIIFSGGLSYDK | Cerebellum | — | — | 0 | MRM | — | |
| Q60675 | Lama2 | NTWWQSPSIK | BrainStem | — | — | 0 | MRM | — | |
| Q61696 | Hspa1a | NQVALNPQNTVFDAK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q61838 | Pzp | GEAFTLK | Cerebrum | — | — | 0 | MRM | — | |
| Q61838 | Pzp | GEAFTLK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q61941 | Nnt | AQYPIADLVK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q62000 | Ogn | LDFTGNLIEDIEDGTFSK | Cerebrum | — | — | 0 | MRM | — | |
| Q62425 | Ndufa4 | NNPEPWNK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q6GQW0 | Abtb3 | LDAVAIEAK | BrainStem | — | — | 0 | MRM | — | |
| Q6P6M7 | Sepsecs | SGDISAVQPK | Cerebellum | — | — | 0 | MRM | — | |
| Q6P8X1 | Snx6 | SLVDYENANK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q6P9Q4 | Fhod1 | FLENVAAAETEK | BrainStem | — | — | 0 | MRM | — | |
| Q6ZWQ7 | Spcs3 | YFFFDDGNGLK | Cerebellum | — | — | 0 | MRM | — | |
| Q6ZWQ7 | Spcs3 | YFFFDDGNGLK | Cerebrum | — | — | 0 | MRM | — | |
| Q76KF0 | Sema6d | TPDSVWTAVPEDK | BrainStem | — | — | 0 | MRM | — | |
| Q76KF0 | Sema6d | TPDSVWTAVPEDK | MockWholeBrain | — | — | 0 | MRM | — | |
| Q7TMY8 | Huwe1 | FLQFVTGTSK | MockWholeBrain | — | — | 0 | MRM | — |