| Uniprot ID | Gene | Peptide Sequence | Tissue | Mouse Conc. (fmol/μg) | Incorp. (%) | Missed Cleav. | Assays Available | PTM | |
|---|---|---|---|---|---|---|---|---|---|
| E9QA16 | Cald1 | INEWLTK | MockWholeBrain | — | — | 0 | MRM | — | |
| F6ZGI7 | Mocs2 | SETISVPQEIK | Cerebellum | — | — | 0 | MRM | — | |
| O08688 | Capn5 | GTSTPEYNVK | Cerebellum | — | — | 0 | MRM | — | |
| O08688 | Capn5 | GTSTPEYNVK | Cerebrum | — | — | 0 | MRM | — | |
| O08688 | Capn5 | GTSTPEYNVK | MockWholeBrain | — | — | 0 | MRM | — | |
| O08749 | Dld | ALTGGIAHLFK | MockWholeBrain | — | — | 0 | MRM | — | |
| O08912 | Galnt1 | NFFYIISPGVTK | BrainStem | — | — | 0 | MRM | — | |
| O09167 | Rpl21 | GTWVQLK | MockWholeBrain | — | — | 0 | MRM | — | |
| O35207 | Cdk2ap1 | EIRPTYAGSK | BrainStem | — | — | 0 | MRM | — | |
| O35207 | Cdk2ap1 | EIRPTYAGSK | BrainStem | — | — | 0 | MRM | — | |
| O35226 | Psmd4 | IIAFVGSPVEDNEK | Cerebrum | — | — | 0 | MRM | — | |
| O35375 | Nrp2 | IVLNFNPHFEIEK | MockWholeBrain | — | — | 0 | MRM | — | |
| O55143 | Atp2a2 | IGIFGQDEDVTSK | MockWholeBrain | — | — | 0 | MRM | — | |
| O70404 | Vamp8 | TEDLEATSEHFK | BrainStem | — | — | 0 | MRM | — | |
| O70404 | Vamp8 | TEDLEATSEHFK | Cerebrum | — | — | 0 | MRM | — | |
| O70475 | Ugdh | INAWNSPTLPIYEPGLK | MockWholeBrain | — | — | 0 | MRM | — | |
| O88876 | Dhrs3 | VGDITILVNNAAVVHGK | BrainStem | — | — | 0 | MRM | — | |
| O88876 | Dhrs3 | VGDITILVNNAAVVHGK | Cerebellum | — | — | 0 | MRM | — | |
| O88968 | Tcn2 | EDLYLHSLK | BrainStem | — | — | 0 | MRM | — | |
| O88968 | Tcn2 | EDLYLHSLK | Cerebellum | — | — | 0 | MRM | — | |
| O88968 | Tcn2 | EDLYLHSLK | MockWholeBrain | — | — | 0 | MRM | — | |
| P00329 | Adh1 | GAIFGGFK | Cerebrum | — | — | 0 | MRM | — | |
| P00329 | Adh1 | IIAVDINK | BrainStem | — | — | 0 | MRM | — | |
| P00375 | Dhfr | TWFSIPEK | MockWholeBrain | — | — | 0 | MRM | — | |
| P01027 | C3 | EVVADSVWVDVK | Cerebellum | — | — | 0 | MRM | — | |
| P01027 | C3 | EVVADSVWVDVK | MockWholeBrain | — | — | 0 | MRM | — | |
| P01027 | C3 | GVFVLNK | Cerebellum | — | — | 0 | MRM | — | |
| P01027 | C3 | GVFVLNK | MockWholeBrain | — | — | 0 | MRM | — | |
| P01027 | C3 | IWDVVEK | BrainStem | — | — | 0 | MRM | — | |
| P01027 | C3 | IWDVVEK | MockWholeBrain | — | — | 0 | MRM | — | |
| P01029 | C4b | YVLPNFEVK | BrainStem | — | — | 0 | MRM | — | |
| P01029 | C4b | YVLPNFEVK | MockWholeBrain | — | — | 0 | MRM | — | |
| P01904 | H2-Ea | FASFEAQGALANIAVDK | Cerebellum | — | — | 0 | MRM | — | |
| P06745 | Gpi | VDHQTGPIVWGEPGTNGQHAFYQLIHQGTK | Cerebrum | — | — | 0 | MRM | — | |
| P07356 | Anxa2 | TPAQYDASELK | MockWholeBrain | — | — | 0 | MRM | — | |
| P08030 | Aprt | AELEIQK | MockWholeBrain | — | — | 0 | MRM | — | |
| P09470 | Ace | VFDGSITK | BrainStem | — | — | 0 | MRM | — | |
| P11087 | Col1a1 | GFSGLDGAK | Cerebrum | — | — | 0 | MRM | — | |
| P13745 | Gsta1 | WLLAAAGVEFEEK | Cerebellum | — | — | 0 | MRM | — | |
| P16332 | Mmut | AAVQVLDDIEK | MockWholeBrain | — | — | 0 | MRM | — | |
| P22907 | Hmbs | ILDTALSK | BrainStem | — | — | 0 | MRM | — | |
| P26645 | Marcks | EELQANGSAPAADK | Cerebrum | — | — | 0 | MRM | — | |
| P26645 | Marcks | EELQANGSAPAADK | MockWholeBrain | — | — | 0 | MRM | — | |
| P28028 | Braf | LTQEHIEALLDK | MockWholeBrain | — | — | 0 | MRM | — | |
| P30412 | Ppic | TVENFVALATGEK | MockWholeBrain | — | — | 0 | MRM | — | |
| P31230 | Aimp1 | ITFDAFPGEPDK | BrainStem | — | — | 0 | MRM | — | |
| P31230 | Aimp1 | ITFDAFPGEPDK | Cerebellum | — | — | 0 | MRM | — | |
| P31230 | Aimp1 | ITFDAFPGEPDK | Cerebrum | — | — | 0 | MRM | — | |
| P31230 | Aimp1 | ITFDAFPGEPDK | MockWholeBrain | — | — | 0 | MRM | — | |
| P35822 | Ptprk | SLQGTSFENK | BrainStem | — | — | 0 | MRM | — |