| Uniprot ID | Gene | Peptide Sequence | Tissue | Mouse Conc. (fmol/μg) | Incorp. (%) | Missed Cleav. | Assays Available | PTM | |
|---|---|---|---|---|---|---|---|---|---|
| Q8BH95 | Echs1 | AFAAGADIK | MockWholeBrain | — | 25.6 | 0 | MRM | — | |
| E9Q0M9 | Cald1 | INEWLTK | Cerebrum | — | 25.0 | 0 | MRM | — | |
| A6H6A9 | Rabgap1l | DTGGDGQESLYK | Cerebrum | — | 24.7 | 0 | MRM | — | |
| A2A848 | Acox1 | YDGNVYENLFEWAK | Cerebellum | — | 24.5 | 0 | MRM | — | |
| Q8C6B0 | Tmt1a | ELFSNLQEFAGPSGK | MockWholeBrain | — | 21.3 | 0 | MRM | — | |
| Q99K85 | Psat1 | QVVNFGPGPAK | MockWholeBrain | — | 21.1 | 0 | MRM | — | |
| Q91W43 | Gldc | AGHQLQHDLFFDTLK | Cerebrum | — | 20.2 | 0 | MRM | — | |
| Q8R146 | Apeh | SFNLSALEK | MockWholeBrain | — | 18.6 | 0 | MRM | — | |
| Q02819 | Nucb1 | LQAANAEDIK | Cerebellum | — | 17.8 | 0 | MRM | — | |
| O88685 | Psmc3 | LKPGDLVGVNK | BrainStem | — | 16.5 | 0 | MRM | — | |
| Q3U8Y7 | Psmc3 | LKPGDLVGVNK | BrainStem | — | 16.5 | 0 | MRM | — | |
| P50247 | Ahcy | VPAINVNDSVTK | MockWholeBrain | — | 16.4 | 0 | MRM | — | |
| O88685 | Psmc3 | LKPGDLVGVNK | Cerebrum | — | 16.2 | 0 | MRM | — | |
| Q3U8Y7 | Psmc3 | LKPGDLVGVNK | Cerebrum | — | 16.2 | 0 | MRM | — | |
| Q80UM7 | Mogs | YLGLPGSLK | BrainStem | — | 13.1 | 0 | MRM | — | |
| Q3U8Y7 | Psmc3 | LKPGDLVGVNK | Cerebellum | — | 10.5 | 0 | MRM | — | |
| Q80UM7 | Mogs | YLGLPGSLK | Cerebrum | — | 9.5 | 0 | MRM | — | |
| Q3U8Y7 | Psmc3 | LKPGDLVGVNK | MockWholeBrain | — | 9.5 | 0 | MRM | — | |
| P35278 | Rab5c | QASPNIVIALAGNK | MockWholeBrain | — | 6.3 | 0 | MRM | — | |
| Q922U2 | Krt5 | TEAESWYQTK | BrainStem | — | 4.3 | 0 | MRM | — | |
| Q922U2 | Krt5 | TEAESWYQTK | MockWholeBrain | — | 3.7 | 0 | MRM | — | |
| Q80UM7 | Mogs | YLGLPGSLK | MockWholeBrain | — | 2.6 | 0 | MRM | — | |
| O55143 | Atp2a2 | NAENAIEALK | MockWholeBrain | — | 2.3 | 0 | MRM | — | |
| P97798 | Neo1 | ITWADNSLPK | MockWholeBrain | — | 1.5 | 0 | MRM | — | |
| Q922U2 | Krt5 | TEAESWYQTK | Cerebrum | — | 0.9 | 0 | MRM | — | |
| Q71RI9 | Kyat3 | TFSVTGWK | Cerebellum | — | 0.5 | 0 | MRM | — | |
| A0A087WSN6 | Fn1 | TYHVGEQWQK | BrainStem | — | — | 0 | MRM | — | |
| A0A0J9YVF6 | Zeb2 | AVLQPHENIVPNK | Cerebrum | — | — | 0 | MRM | — | |
| A0A0R4J1E2 | Eef1d | VGTDLLEEEITK | Cerebrum | — | — | 0 | MRM | — | |
| A0A0R4J1E2 | Eef1d | VGTDLLEEEITK | MockWholeBrain | — | — | 0 | MRM | — | |
| A0A1W2P7Y1 | Ptprk | SLQGTSFENK | MockWholeBrain | — | — | 0 | MRM | — | |
| A0A286YCT4 | Ssr1 | FLVGFTNK | Cerebellum | — | — | 0 | MRM | — | |
| A0A338P6F7 | Robo1 | IVEHPSDLIVSK | MockWholeBrain | — | — | 0 | MRM | — | |
| A0A3B2WBE1 | Epb41l3 | HQTNISELK | Cerebellum | — | — | 0 | MRM | — | |
| A2ABY3 | Pcyt2 | DTYEEVK | Cerebrum | — | — | 0 | MRM | — | |
| A2AF53 | Tmem185a | VVITQSPGK | BrainStem | — | — | 0 | MRM | — | |
| A2AJL3 | Fggy | AGHFFDLPDFLSWK | Cerebellum | — | — | 0 | MRM | — | |
| B2RQC6 | Cad | LAADFSVPLIIDIK | MockWholeBrain | — | — | 0 | MRM | — | |
| B2RQC6 | Cad | LSSFVTK | MockWholeBrain | — | — | 0 | MRM | — | |
| B2RQC6 | Cad | SFPFVSK | Cerebellum | — | — | 0 | MRM | — | |
| B2RUK2 | Erbin | NGIQEFPENIK | BrainStem | — | — | 0 | MRM | — | |
| B2RUK2 | Erbin | NGIQEFPENIK | Cerebellum | — | — | 0 | MRM | — | |
| B2RUK2 | Erbin | NGIQEFPENIK | Cerebrum | — | — | 0 | MRM | — | |
| B2RXS4 | Plxnb2 | LFYEDGSGEK | BrainStem | — | — | 0 | MRM | — | |
| B2RXX0 | Nek1 | FFEVYEK | BrainStem | — | — | 0 | MRM | — | |
| E9PWR7 | Evi5 | TYPEHNFFK | Cerebrum | — | — | 0 | MRM | — | |
| E9Q414 | Apob | GFEPTLEALFGK | BrainStem | — | — | 0 | MRM | — | |
| E9Q414 | Apob | GFEPTLEALFGK | Cerebrum | — | — | 0 | MRM | — | |
| E9Q414 | Apob | GFEPTLEALFGK | MockWholeBrain | — | — | 0 | MRM | — | |
| E9Q4Z2 | Acacb | GGVLEPEGTVEIK | BrainStem | — | — | 0 | MRM | — |