| Uniprot ID | Gene | Peptide Sequence | Tissue | Mouse Conc. (fmol/μg) | Incorp. (%) | Missed Cleav. | Assays Available | PTM | |
|---|---|---|---|---|---|---|---|---|---|
| P48036 | Anxa5 | LYDAYELK | BrainStem | — | 98.1 | 0 | PRM | — | |
| P47754 | Capza2 | EGAAHAFAQYNLDQFTPVK | MockWholeBrain | — | 98.0 | 0 | PRM | — | |
| P61205 | Arf3 | DAVLLVFANK | BrainStem | — | 97.9 | 0 | PRM | — | |
| P84084 | Arf5 | DAVLLVFANK | BrainStem | — | 97.9 | 0 | PRM | — | |
| P61205 | Arf3 | DAVLLVFANK | Cerebrum | — | 97.8 | 0 | PRM | — | |
| P84084 | Arf5 | DAVLLVFANK | Cerebrum | — | 97.8 | 0 | PRM | — | |
| Q9ES46 | Parvb | QLEEDLYDGQVLQK | Cerebrum | — | 97.5 | 0 | PRM | — | |
| P23927 | Cryab | HFSPEELK | Cerebellum | — | 97.3 | 0 | PRM | — | |
| E9Q5F4 | Actb | VAPEEHPVLLTEAPLNPK | Cerebellum | — | 96.9 | 0 | PRM | — | |
| P60710 | Actb | VAPEEHPVLLTEAPLNPK | Cerebellum | — | 96.9 | 0 | PRM | — | |
| P63260 | Actg1 | VAPEEHPVLLTEAPLNPK | Cerebellum | — | 96.9 | 0 | PRM | — | |
| P10853 | H2bc7 | LLLPGELAK | Cerebrum | — | 96.1 | 0 | PRM | — | |
| P10854 | H2bc14 | LLLPGELAK | Cerebrum | — | 96.1 | 0 | PRM | — | |
| P11438 | Lamp1 | ALQATVGNSYK | MockWholeBrain | — | 95.8 | 0 | PRM | — | |
| P10853 | H2bc7 | LLLPGELAK | Cerebellum | — | 95.8 | 0 | PRM | — | |
| Q8CGP0 | H2bc26 | LLLPGELAK | MockWholeBrain | — | 95.2 | 0 | PRM | — | |
| P61205 | Arf3 | DAVLLVFANK | Cerebellum | — | 93.7 | 0 | PRM | — | |
| Q642K0 | Myl6 | HVLVTLGEK | MockWholeBrain | — | 93.7 | 0 | PRM | — | |
| Q9QZ83 | Actg1 | VAPEEHPVLLTEAPLNPK | Cerebrum | — | 93.6 | 0 | PRM | — | |
| P05214 | Tuba3a | DVNAAIATIK | Cerebrum | — | 92.8 | 0 | PRM | — | |
| P68373 | Tuba1c | DVNAAIATIK | Cerebrum | — | 92.8 | 0 | PRM | — | |
| P68373 | Tuba1c | DVNAAIATIK | Cerebellum | — | 92.7 | 0 | PRM | — | |
| Q8CIE6 | Copa | QELILSNSEDK | Cerebrum | — | 92.2 | 0 | PRM | — | |
| P63260 | Actg1 | VAPEEHPVLLTEAPLNPK | MockWholeBrain | — | 91.5 | 0 | PRM | — | |
| P84084 | Arf5 | DAVLLVFANK | Cerebellum | — | 87.4 | 0 | PRM | — | |
| P10853 | H2bc7 | LLLPGELAK | BrainStem | — | 86.5 | 0 | PRM | — | |
| Q8CIE6 | Copa | QELILSNSEDK | MockWholeBrain | — | 83.8 | 0 | PRM | — | |
| Q8CGP0 | H2bc26 | LLLPGELAK | Cerebellum | — | 81.7 | 0 | PRM | — | |
| P68373 | Tuba1c | DVNAAIATIK | BrainStem | — | 62.6 | 0 | PRM | — | |
| A0A4E9FSP6 | IGLC2 | YAASSYLSLTPEQWK | Cerebrum | — | 37.6 | 0 | PRM | — | |
| P05213 | Tuba1b | DVNAAIATIK | Cerebellum | — | 26.8 | 0 | PRM | — | |
| P05214 | Tuba3a | DVNAAIATIK | Cerebellum | — | 26.8 | 0 | PRM | — | |
| P68369 | Tuba1a | DVNAAIATIK | Cerebellum | — | 26.8 | 0 | PRM | — | |
| A0A097PUG1 | nan | VVSVLTVLHQDWLNGK | BrainStem | — | — | 0 | PRM | — | |
| A0A097PUG1 | nan | VVSVLTVLHQDWLNGK | Cerebrum | — | — | 0 | PRM | — | |
| A0A4E9FSP6 | IGLC2 | YAASSYLSLTPEQWK | BrainStem | — | — | 0 | PRM | — | |
| A0A4E9FT70 | IGHG3 | VVSVLTVLHQDWLNGK | MockWholeBrain | — | — | 0 | PRM | — | |
| A0A4E9FU10 | IGHG4 | VVSVLTVLHQDWLNGK | Cerebrum | — | — | 0 | PRM | — | |
| P05213 | Tuba1b | DVNAAIATIK | Cerebrum | — | — | 0 | PRM | — | |
| Q9DC11 | Plxdc2 | EIPVLVTQISSTNHPVK | MockWholeBrain | — | — | 0 | PRM | — | |
| Q9Z126 | Pf4 | HITSLEVIK | BrainStem | — | — | 0 | PRM | — | |
| Q9Z126 | Pf4 | HITSLEVIK | Cerebrum | — | — | 0 | PRM | — | |
| Q9Z126 | Pf4 | HITSLEVIK | MockWholeBrain | — | — | 0 | PRM | — | |
| P07724 | Alb | AFKAWAVAR | BrainStem | — | — | 1 | PRM | — | |
| P07724 | Alb | AFKAWAVAR | Cerebrum | — | — | 1 | PRM | — | |
| O55234 | Psmb5 | LLANMVYQYK | BrainStem | — | 100.0 | 0 | PRM | ['Meth'] | |
| O55234 | Psmb5 | LLANMVYQYK | Cerebellum | — | 100.0 | 0 | PRM | ['Meth'] | |
| P68033 | Actc1 | YPIEHGIITNWDDMEK | Cerebrum | — | 100.0 | 0 | PRM | ['Meth'] | |
| P68134 | Acta1 | YPIEHGIITNWDDMEK | Cerebrum | — | 100.0 | 0 | PRM | ['Meth'] | |
| Q3UBQ4 | Actb | YPIEHGIITNWDDMEK | Cerebrum | — | 100.0 | 0 | PRM | ['Meth'] |